PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018923.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 680aa    MW: 77319.2 Da    PI: 6.588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018923.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS382.64.8e-1173076773374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL++cA+a +s d++ a+++L+++++++sp+gd+++Rla+yf+ +L+arl++  +  y+ l + +t+    +e l+a++++++ +P+  + h+  N+
  Pbr018923.1 307 TLLTQCAQATASYDQRSASEVLKQIRKHSSPSGDATERLAHYFADGLEARLVGARTPSYSPLLSIQTP---AAEILKAHQMYVNYCPFKYMLHFFSNR 401
                  79***************************************************999999999888888...89************************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  +I + +e+++r+Hi+Df+is+G+QWp+L+q L++R++gpps+R+T+++ p++g   +e++eetg+rL+k+A++++v+fe++v  a+++e+++le+L++
  Pbr018923.1 402 TIIKLAEKATRLHIVDFGISYGFQWPCLIQRLSERNGGPPSIRLTAIELPQPGfrPTERVEETGRRLKKYAARFNVQFEYKV-FAQKWETIQLEDLKI 498
                  ****************************************************9****************************9.7************** PP

         GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                  +++E ++Vn++++l++++de+v ++s+rd vLkl+++++P+++++   +  +ns+ F++rf eal+++sa+fd++ea++pre+e+r++ E+++ g++i
  Pbr018923.1 499 DRNELTVVNCMHRLKHIPDETVVVSSPRDLVLKLIRRINPDLFIHGVVNGTYNSPFFVTRFKEALYHFSAMFDMFEATIPREDEQRMMFEKAIYGKDI 596
                  ************************************************************************************************** PP

         GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +nvvaceg er+er et+++W+ r ++aGFk+vpl+++  k +k +l+ ++  d +r++e+ +++++gWk+r ++ + +W+
  Pbr018923.1 597 MNVVACEGLERVERPETYKQWQVRYHRAGFKQVPLDQELLKRVKIMLKAMHyHDDFRIDEDGDWMLQGWKGRIIFGLAFWK 677
                  ***********************************************99998999*************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.434279656IPR005202Transcription factor GRAS
PfamPF035141.7E-114307677IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDTLFERFSS PMKNFQFGST QFQVNHEPTN PLFLPTTPEH PTDSGFSNPG SDGDSFDMSD  60
YNHSVIKYIS DILLEEDLED KPCMLQNCLA LQAAEKSFYD VLNPKDPPSP DQPPHPVYQS  120
FEHSDDDSSQ SYSSNDSMAA KADSVFDSSE TLLVSNSTSG NFGGVGEAGN LVPNLKHGII  180
DLQRYQLVPP GDNTLGRNSA PEPENDGYIS ANRLKGKKNH QREDGDYADG GRSNKQSAAL  240
GDDTEPQEMF DRVLLCHVNH THASCIRDKP LSSEGSEKLQ PKKQSKGSKT TRLKKQNNYQ  300
EVVDISTLLT QCAQATASYD QRSASEVLKQ IRKHSSPSGD ATERLAHYFA DGLEARLVGA  360
RTPSYSPLLS IQTPAAEILK AHQMYVNYCP FKYMLHFFSN RTIIKLAEKA TRLHIVDFGI  420
SYGFQWPCLI QRLSERNGGP PSIRLTAIEL PQPGFRPTER VEETGRRLKK YAARFNVQFE  480
YKVFAQKWET IQLEDLKIDR NELTVVNCMH RLKHIPDETV VVSSPRDLVL KLIRRINPDL  540
FIHGVVNGTY NSPFFVTRFK EALYHFSAMF DMFEATIPRE DEQRMMFEKA IYGKDIMNVV  600
ACEGLERVER PETYKQWQVR YHRAGFKQVP LDQELLKRVK IMLKAMHYHD DFRIDEDGDW  660
MLQGWKGRII FGLAFWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-443096778375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008359006.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_008384949.10.0PREDICTED: scarecrow-like protein 30
TrEMBLD9ZJB90.0D9ZJB9_MALDO; SCL domain class transcription factor
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein